SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement
Publication date: Available online 27 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Zhenlan Liang, Min Li, Ruiqing Zheng, Yu Tian, Xuhua Yan, Jin Chen, Fang-Xiang Wu, Jianxin Wang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 28, 2021 Category: Bioinformatics Source Type: research

High VHL Expression Reverses Warburg Phenotype and Enhances Immunogenicity in Kidney Tumor Cells
Publication date: Available online 27 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Songbiao Zhu, Wenxi Ding, Yuling Chen, Weixuan Wang, Renhua Xu, Chongdong Liu, Xiaohui Liu, Haiteng Deng (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 28, 2021 Category: Bioinformatics Source Type: research

Global Landscape of Native Protein Complexes in Synechocystis sp. PCC 6803
Publication date: Available online 24 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Chen Xu, Bing Wang, Lin Yang, Lucas Zhongming Hu, Lanxing Yi, Yaxuan Wang, Shenglan Chen, Andrew Emili, Cuihong Wan (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 24, 2021 Category: Bioinformatics Source Type: research

Expanding the Coverage of the Metabolic Landscape in Cultivated Rice with Integrated Computational Approaches
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Xuetong Li, Hongxia Zhou, Ning Xiao, Xueting Wu, Yuanhong Shan, Longxian Chen, Cuiting Wang, Zixuan Wang, Jirong Huang, Aihong Li, Xuan Li (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

SPA: A Quantitation Strategy for MS Data in Patient-derived Xenograft Models
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Xi Cheng, Lili Qian, Bo Wang, Minjia Tan, Jing Li (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

Biogeographic and Evolutionary Patterns of Trace Element Utilization in Marine Microbial World
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Yinzhen Xu, Jiayu Cao, Liang Jiang, Yan Zhang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

Mining Unknown Porcine Protein Isoforms by Tissue-Based Map of Proteome Enhances the Pig Genome Annotation
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Pengju Zhao, Xianrui Zheng, Ying Yu, Zhuocheng Hou, Chenguang Diao, Haifei Wang, Huimin Kang, Chao Ning, Junhui Li, Wen Feng, Wen Wang, George E. Liu, Bugao Li, Jacqueline Smith, Yangzom Chamba, Jian-Feng Liu (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

DEBKS: A Tool to Detect Differentially Expressed Circular RNA
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Zelin Liu, Huiru Ding, Jianqi She, Chunhua Chen, Weiguang Zhang, Ence Yang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

Epithelial Cells in 2D and 3D Cultures Exhibit Large Differences in Higher-order Genomic Interactions
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Xin Liu, Qiu Sun, Qi Wang, Chuansheng Hu, Xuecheng Chen, Hua Li, Daniel M. Czajkowsky, Zhifeng Shao (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

Integrating Genomic and Transcriptomic Data to Reveal Genetic Mechanisms Underlying Piao Chicken Rumpless Trait
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Yun-Mei Wang, Saber Khederzadeh, Shi-Rong Li, Newton Otieno Otecko, David M Irwin, Mukesh Thakur, Xiao-Die Ren, Ming-Shan Wang, Dong-Dong Wu, Ya-Ping Zhang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

Oleic Acid and Eicosapentaenoic Acid Reverse Palmitic Acid-induced Insulin Resistance in Human HepG2 Cells via the Reactive Oxygen Species / JUN Pathway
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Yaping Sun, Jifeng Wang, Xiaojing Guo, Nali Zhu, Lili Niu, Xiang Ding, Zhensheng Xie, Xiulan Chen, Fuquan Yang (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

Characterizing RNA Pseudouridylation by Convolutional Neural Networks
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Xuan He, Sai Zhang, Yanqing Zhang, Zhixin Lei, Tao Jiang, Jianyang Zeng (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

QAUST: Protein Function Prediction Using Structure Similarity, Protein Interaction, and Functional Motifs
Publication date: Available online 23 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Fatima Zohra Smaili, Shuye Tian, Ambrish Roy, Meshari Alazmi, Stefan T. Arold, Srayanta Mukherjee, P. Scott Hefty, Wei Chen, Xin Gao (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 23, 2021 Category: Bioinformatics Source Type: research

Computational Screening of Biological Phase-separating Proteins
Publication date: Available online 19 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Boyan Shen, Zhaoming Chen, Chunyu Yu, Taoyu Chen, Minglei Shi, Tingting Li (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 19, 2021 Category: Bioinformatics Source Type: research

The Role of DNA Methylation Reprogramming during Sex Determination and Transition in Zebrafish
Publication date: Available online 19 February 2021Source: Genomics, Proteomics & BioinformaticsAuthor(s): Xinxin Wang, Xin Ma, Gaobo Wei, Weirui Ma, Zhen Zhang, Xuepeng Chen, Lei Gao, Zhenbo Liu, Yue Yuan, Lizhi Yi, Jun Wang, Toshinobu Tokumoto, Junjiu Huang, Dahua Chen, Jian Zhang, Jiang Liu (Source: Genomics, Proteomics and Bioinformatics)
Source: Genomics, Proteomics and Bioinformatics - February 19, 2021 Category: Bioinformatics Source Type: research