PubChem Upload 1.0f Released
PubChem
Upload 1.0f is released! Adding your information to PubChem (https://pubchem.ncbi.nlm.nih.gov/upload/ ) is now easier than ever. The new
PubChem Upload system offers streamlined procedures for data submissions and
includes an extensive set of wizards, inline help tips, and templates to assist
users. Visit the PubChem Blog (http://1.usa.gov/1ayl7ze)
to read more about it. (Source: PubChem News)
Source: PubChem News - November 21, 2013 Category: Chemistry Authors: PubChem Source Type: news
PubChem on social media
The PubChem Social Media
campaign is now launched! Follow us on Twitter, Facebook,
and Google+ to keep up with the latest PubChem
resources and features. Share PubChem pages with your friends and colleagues.
Visit the new PubChem blog to read more about
it. (Source: PubChem News)
Source: PubChem News - September 4, 2013 Category: Chemistry Authors: PubChem Source Type: news
UniCarbKB deposited structures in PubChem
Structures from UniCarbKB are now available in PubChem. UniCarbKB
is an initiative to create an online information storage and search platform for
glycomics and glycobiology research. UniCarbKB curates information from the
scientific literature on glycoprotein derived glycan structures, building on
previous curation efforts by GlycoSuiteDB and continuing the principles of
EUROCarbDB to provide an open-access platform for glycoinformatics. This is the
first phase in the release of structures from UniCarbKB and the entries will be
updated as the UniCarbKB structure database develops. (Source: PubChem News)
Source: PubChem News - April 9, 2013 Category: Chemistry Authors: PubChem Source Type: news
New version widgets release
New PubChem
Widgets can be used to display a carousel of chemical structures, display
the classification of a compound/substance/bioassay of
interest, or provide an autocomplete function within your own web page. In
addition, features have been added to the table-based
widgets(bioactivity, patents,
and PubMed),
including a share
button that allows you to open the widget in a
PubChem page or embed the widget in your own page as an iframe, and an option to
display graphical
filters for subsetting the data (currently
available only for the ...
Source: PubChem News - April 9, 2013 Category: Chemistry Authors: PubChem Source Type: news
PubChem Upload (new version of Deposition Gateway) release
A
new PubChem Upload system offers streamlined procedures
for data submissions and updates to both the PubChem Substance and BioAssay
databases! This system is currently in Beta release, but will eventually replace
the original Pubchem Deposition
Gateway.
The new capabilities offered by PubChem Upload include:
Assay & Substance wizards assist novice users
UI speed greatly improved with newer web technology (minimizing possible
time-outs)
Easy new user registration/easy upgrade to production account
Improved help, including hints built into user interface and tutorial
Substance input w...
Source: PubChem News - April 5, 2013 Category: Chemistry Authors: PubChem Source Type: news
PubChem DataDicer release
Pubchem BioAssay
DataDicer:
a new, efficient search engine for BioAssay outcomes, is now available
athttp://dd.ncbi.nlm.nih.gov/datadicer/2/.
The PubChem DataDicer allows both novice and expert scientists to search and
subset the greater than 200 million BioAssay outcomes from the PubChem BioAssay
database. Users can query by molecular descriptors, genes, pathways, bioassay
categories and other data types, in order to retrieve bioactivity outcomes for
genes/proteins that were the targets of bioassays, or for small molecules that
were screened in the bioassays. The data are linked to multiple NCBI databases,
allow...
Source: PubChem News - April 5, 2013 Category: Chemistry Authors: PubChem Source Type: news
ChemAxon deposited data in PubChem
Nearly
300,000 structures from ChemAxon's chemicalize.org database are now available in PubChem,
including approximately 62,000 novel structures. All structures have links back
to chemicalize.org data pages with predicted data including pKa, logP/D, names
and identifiers, and more, all of which can be downloaded as structure data
files (SDF). The announcement from ChemAxon provides additional
details. (Source: PubChem News)
Source: PubChem News - January 23, 2013 Category: Chemistry Authors: PubChem Source Type: news
SureChem in PubChem
More
than 8 million structures from the SureChem patent chemistry database are now
available in PubChem. SureChem has deposited chemistry for their complete
collection of US, EP and WO full text patents from the 1976 to the present,
after filtering out common chemicals, reactive groups and fragments. Over 4
million of these structures are new to the PubChem Compound database,
significantly expanding public access to novel medicinal chemistry. Users can
view the structures within the context of the patent by following the External
ID link to SureChemOpen, a free patent chemistry search tool. A&nb...
Source: PubChem News - December 10, 2012 Category: Chemistry Authors: PubChem Source Type: news
PubChem Classification Browser
Use the new
PubChem Classification Browser
to browse PubChem data using a classification
of interest, or to search for PubChem records annotated with the desired
classification system and term.
Illustrated examples
of search results for PubChem Compounds
classified as methotrexate, and for PubChem BioAssays that tested protein
targets involved in DNA repair, are available in the help
document. (Source: PubChem News)
Source: PubChem News - October 5, 2012 Category: Chemistry Authors: PubChem Source Type: news
PubChem Widgets: Show data your way
Show data your way with the new PubChem
Widgets. Display concise tables of patents, bioactivities, and literature
for PubChem data in your web pages with three easy steps. See the
help
document
for details and examples of the data views
available. (Source: PubChem News)
Source: PubChem News - October 1, 2012 Category: Chemistry Authors: PubChem Source Type: news
SCRIPDB deposited structures in PubChem
More
than 6 million structures from SCRIPDB are now available in PubChem. Extracted
from the complex work
units of more than 300,000 USPTO patents between the years of 2001-2012,
these PubChem Substance records link to both SCRIPDB and the USPTO websites.
A full text
article describing the SCRIPDB project is
available in PubMed Central. (Source: PubChem News)
Source: PubChem News - September 19, 2012 Category: Chemistry Authors: PubChem Source Type: news
PubChem HTTPS compatible
PubChem
databases and services are now Hypertext Transfer Protocol Secure (HTTPS)
compatible, allowing one to use encryption in their interactions with
PubChem. (Source: PubChem News)
Source: PubChem News - September 17, 2012 Category: Chemistry Authors: PubChem Source Type: news
The PUG REST 1.0 release
The
PUG REST 1.0 version is now available! It is a REST-style interface for
accessing PubChem data and services through simple HTTP requests, for use in
scripts, javascript embedded in web pages, and 3rd party applications, without
the overhead of XML, SOAP envelopes, etc., that are required for other versions
of PUG. PUG REST can deliver customized output for individual PubChem records,
or for small sets of records, in a way that is not possible with other PubChem
services. For example, it can retrieve specific data elements, such as molecular
weight or a chemical structure image, for a molecule of interest withou...
Source: PubChem News - September 13, 2012 Category: Chemistry Authors: PubChem Source Type: news
PubChem's 8th BDay
PubChem
reaches milestones on 8th birthday! More than 100 million live records are now
available in PubChem Substance, and nearly 200 million outcomes are available in
PubChem BioAssay, representing contributions from more than 200 depositors that
have joined the PubChem project since its launch on September 16,
2004. (Source: PubChem News)
Source: PubChem News - September 12, 2012 Category: Chemistry Authors: PubChem Source Type: news
PubChem added Gene Ontology (GO) in BioAssay summary
The PubChem BioAssay summary pages now display the Gene Ontology (GO) classification of the
gene/protein target(s) that were tested by the bioassay. The GO terms are
associated with each gene/protein in an automated way as part of the biosystems
database data processing procedures, using the method
described in the Biosystems help document. All GO terms that apply to the
gene(s)/protein(s) tested by the bioassay are shown in the GO hierarchy,
including: (1) biological processes, (2) cellular components, and (3) molecular
functions. Clicking on any GO term in the hierarchy will retrieve all bioassays
that have teste...
Source: PubChem News - June 5, 2012 Category: Chemistry Authors: Pubchem Source Type: news
