PubChem PUG REST beta release
PubChem
PUG REST a RESTful web interface to PubChem data and services. Documentation
and examples are available athttp://pubchem.ncbi.nlm.nih.gov/pug_rest/ . This service is considered to be in a
beta state right now, meaning it is under active development and some changes
may occur but the interface should be mostly stable. The purpose of this beta
release is to make some basic functionality available now, and to invite
feedback from the PubChem user community. Please try it out and tell us what you
think; contact pubchem-help@ncbi.nlm.nih.gov with questions, problems, or
suggestions for new feat...
Source: PubChem News - April 24, 2012 Category: Chemistry Authors: PubChem Source Type: news
Therapeutic Target Database deposited structures in PubChem
Structures
from the Therapeutic Target
Database (TTD) are now available in PubChem.Therapeutic Target
Database (TTD) is a database to provide information about the known and explored
therapeutic protein and nucleic acid targets, the targeted disease, pathway
information and the corresponding drugs directed at each of these targets. Also
included in this database are links to relevant databases containing information
about target function, sequence, 3D structure, ligand binding properties, enzyme
nomenclature and drug structure, therapeutic class, clinical development status.
All information provided are fully refe...
Source: PubChem News - February 21, 2012 Category: Chemistry Authors: PubChem Source Type: news
IBM contributed structures in PubChem
More than 2.5 million structures
from the IBM BAO
(Business Analytics and Optimization) strategic IP insight platform (SIIP)
are now available in PubChem, aggregating data from millions of patents and from
the scientific literature through the year 2000. The chemical substances were
extracted from the textual content, images, and symbols in patents and
literature. The PubChem records link to the IBM web site, where files that list
the patent numbers and PubMed IDs for each substance can be downloaded. See more
related
news... (Source: PubChem News)
Source: PubChem News - December 8, 2011 Category: Chemistry Authors: PubChem Source Type: news
PubChem compound and substance summary updated
PubChem updated the compound and substance summary pages to load faster,
to include dramatically expanded biomedical annotation, and to give an updated
look and feel. For example, the PubChem Compound summary page for aspirin (CID
2244). (Source: PubChem News)
Source: PubChem News - October 5, 2011 Category: Chemistry Authors: PubChem Source Type: news
PubChem3D added as a new layer
A new layer called PubChem3D is added to PubChem to assist with
interrelating diverse chemical structures with similar biological efficacies
against targets. As a part of this, PubChem computes a 3-D conformer model
description for records in the PubChem Compound database when possible (92% of
all records when considering the parent compound of salts). A pre-computed
search per compound record gives immediate access to a set of 3-D similar
compounds (called "Similar Conformers") in PubChem and their respective
superpositions. Systematic augmentation of PubChem resources to include a 3-D
layer provides users with ne...
Source: PubChem News - October 3, 2011 Category: Chemistry Authors: PubChem Source Type: news
PubChem growth in 2011
PubChem in 2011 - Growth Continues
PubChem's information content continues to increase. As of August, 2011,
deposited substance records have reached 85 million, representing to over 30
million chemically unique compounds. Deposited bioassay records have reached 500
thousand, representing over 130 million experimental bioactivity results. New
substance and bioassay records continue to be deposited, and the PubChem team
expects that the steady growth in content and usage seen over the past 7 years
will continue. (Source: PubChem News)
Source: PubChem News - August 12, 2011 Category: Chemistry Authors: PubChem Source Type: news
AmicBase deposited substances in PubChem
Structures
from AmicBase are now
available in PubChem. (Source: PubChem News)
Source: PubChem News - August 10, 2011 Category: Chemistry Authors: PubChem Source Type: news
PubChem's new data retrieving tool released
PubChem is now providing an enhanced bioactivity analysis tool for retrieving bioassay data for a chemical. The tool can be
accessed at http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?cid=myCID for a
given CID or http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgisid=mySID for a
given SID. E.g. For CID 2244, the link is: http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?cid=2244
To find out a CID associated with bioactivity data, you may follow the
URL at http://www.ncbi.nlm.nih.gov/pccompound?term=pccompound_pcassay_active[filt].
Similarly, to find out a SID associated with bioactivity data, you may follow
the URL ...
Source: PubChem News - June 8, 2011 Category: Chemistry Authors: PubChem Source Type: news
PubChem Identifier Exchange Service released
PubChem released the Identifier Exchange
Service. For more information, click here. (Source: PubChem News)
Source: PubChem News - May 28, 2011 Category: Chemistry Authors: PubChem Source Type: news
The BioAssay data specification updated
The BioAssay data specification has been updated. The changes include:
New units in PC-ResultType to facilitate DMPK data submission.
A new element "type" in PC-AnnotatedXRef to record primary citation to
advertise primary publications of the depositors and the bioassay results.
A new element "type" in PC-AssayDRAttr to record experimental vs.
calculated dose-response data points. Please review the update at ftp://ftp.ncbi.nlm.nih.gov/pubchem/data_spec. (Source: PubChem News)
Source: PubChem News - May 23, 2011 Category: Chemistry Authors: pubChem Source Type: news
PubChem released two new data analysis tools
for the bioassay services -
Target
and Compound/Substance
views for the BioActivity Analysis service. These new tools together with the
original bioassay
view component will allow users to explore bioactivity data from molecular
target, chemical structure, and biological experiment perspectives. For more
information, see the related
section in the help page. (Source: PubChem News)
Source: PubChem News - April 11, 2011 Category: Chemistry Authors: PubChem Source Type: news
A new depositor from Calicut University
Structures
from Immunology
Lab, Department of Biotechnology, Calicut University are now available
in PubChem. (Source: PubChem News)
Source: PubChem News - March 18, 2011 Category: Chemistry Authors: PubChem Source Type: news
AKos deposited substances in PubChem
Structures
from AKos are now available in
PubChem. (Source: PubChem News)
Source: PubChem News - March 15, 2011 Category: Chemistry Authors: PubChem Source Type: news
DRSC deposited RNAi data in PubChem
RNAi
screening data and substances
from the Drosophila RNAi Screening Center
(DRSC) are now available in PubChem. (Source: PubChem News)
Source: PubChem News - February 22, 2011 Category: Chemistry Authors: PubChem Source Type: news
Substance vendor - ABI Chem in PubChem
Structures
from ABI Chem are now available in
PubChem. (Source: PubChem News)
Source: PubChem News - February 22, 2011 Category: Chemistry Authors: PubChem Source Type: news
