Adaptive back-stepping cancer control using Legendre polynomials
Here, a model-free controller for cancer treatment is presented. The treatment objective is to find a proper drug dosage that can reduce the population of tumour cells. Recently, some solutions have been proposed according to the control theory. In these approaches, based on the mathematical description of the number of effector cells, tumour cells, and concentration of the interleukin-2 (IL-2), a non-linear controller is designed. Here, based on the back-stepping design procedure and function approximation property of Legendre polynomials, a novel controller for MIMO cancer immunotherapy is presented. In fact, Legendre po...
Source: IET Systems Biology - January 17, 2020 Category: Biology Source Type: research
Improvement in prediction of antigenic epitopes using stacked generalisation: an ensemble approach
In this study, a hybrid model has been designed by using stacked generalisation ensemble technique for prediction of linear B-cell epitopes. The goal of using stacked generalisation ensemble approach is to refine predictions of base classifiers and to get rid of the worse predictions. In this study, six machine learning models are fused to predict variable length epitopes (6–49 mers). The proposed ensemble model achieves 76.6% accuracy and average accuracy of repeated 10-fold cross-validation is 73.14%. The trained ensemble model has been tested on the benchmark dataset and compared with existing sequential B-cell e...
Source: IET Systems Biology - January 17, 2020 Category: Biology Source Type: research
Bifurcation analysis of bistable and oscillatory dynamics in biological networks using the root-locus method
This study demonstrates the applicability of the root-locus-based bifurcation analysis method for studying the complex dynamics of such models. The effectiveness of the bifurcation analysis in determining the exact parameter regions in each of which the system shows a certain dynamical behaviour, such as bistability, oscillation, and asymptotically equilibrium dynamics is shown by considering two mostly studied gene regulatory networks, namely Gardner's genetic toggle switch and p53 gene network possessing two-phase (mono-stable/oscillation) dynamics. (Source: IET Systems Biology)
Source: IET Systems Biology - November 29, 2019 Category: Biology Source Type: research
Modelling and simulation of chlorophyll fluorescence from PSII of a plant leaf as affected by both illumination light intensities and temperatures
The emission of chlorophyll fluorescence (ChlF) from photosystem II (PSII) of plant leaves the couple with photoelectron transduction cascades in photosynthetic reactions and can be used to probe photosynthetic efficiency and plant physiology. Because of population increase, food shortages, and global warming, it is becoming more and more urgent to enhance plant photosynthesis efficiency by controlling plant growth rate. An effective model structure is essential for plant control strategy development. However, there is a lack of reporting on modelling and simulation of PSII activities under the interaction of both illumina...
Source: IET Systems Biology - November 29, 2019 Category: Biology Source Type: research
Competitive analysis for stochastic influenza model with constant vaccination strategy
This manuscript discusses a competitive analysis of stochastic influenza model with constant vaccination strategy. The stochastic influenza model is comparatively more pragmatic versus the deterministic influenza model. The effect of influenza generation number holds in the stochastic model. If the value of this number is less than one, this situation will help us to control the disease in a population. A greater than one value of this threshold number shows the persistence of disease to become endemic. The proposed structure for the stochastic influenza model as stochastic non-standard finite difference scheme conserve al...
Source: IET Systems Biology - November 29, 2019 Category: Biology Source Type: research
Competitive numerical analysis for stochastic HIV/AIDS epidemic model in a two-sex population
This study is an attempt to explain a reliable numerical analysis of a stochastic HIV/AIDS model in a two-sex population considering counselling and antiretroviral therapy (ART). The authors are comparing the solutions of the stochastic and deterministic HIV/AIDS epidemic model. Here, an endeavour has been made to explain the stochastic HIV/AIDS epidemic model is comparatively more pragmatic in contrast with the deterministic HIV/AIDS epidemic model. The effect of threshold number H* holds on the stochastic HIV/AIDS epidemic model. If H* < 1 then condition helps us to control disease in a two-sex human pop...
Source: IET Systems Biology - November 29, 2019 Category: Biology Source Type: research
Fuzzy cognitive map based approach for determining the risk of ischemic stroke
In this study, the soft computing method known as fuzzy cognitive mapping was proposed for diagnosis of the risk of ischemic stroke. Non-linear Hebbian learning method was used for fuzzy cognitive maps training. In the proposed method, the risk rate for each person was determined based on the opinions of the neurologists. The accuracy of the proposed model was tested using 10-fold cross-validation, for 110 real cases, and the results were compared with those of support vector machine and K-nearest neighbours. The proposed system showed a superior performance with a total accuracy of (93.6 ± 4.5)%. The da...
Source: IET Systems Biology - November 29, 2019 Category: Biology Source Type: research
Identifying genuine protein–protein interactions within communities of gene co-expression networks using a deconvolution method
Direct relationships between biological molecules connected in a gene co-expression network tend to reflect real biological activities such as gene regulation, protein–protein interactions (PPIs), and metabolisation. As correlation-based networks contain numerous indirect connections, those direct relationships are always ‘hidden’ in them. Compared with the global network, network communities imply more biological significance on predicting protein function, detecting protein complexes and studying network evolution. Therefore, identifying direct relationships in communities is a pervasive and importan...
Source: IET Systems Biology - November 29, 2019 Category: Biology Source Type: research
Analysis for fractional-order predator–prey model with uncertainty
Here, the authors analyse the fractional-order predator–prey model with uncertainty, due to the vast applications in various ecological systems. The most of the ecological model do not have exact analytic solution, so they proposed a numerical technique for an approximate solution. In the proposed method, they have implemented the higher order term into the fractional Euler method to enhance the precise solution. Further, the present attempt is aimed to discuss the solutions of the FPPM with uncertainty (fuzzy) initial conditions. The initial conditions of the predator–prey model were taken as fuzzy initial c...
Source: IET Systems Biology - November 29, 2019 Category: Biology Source Type: research
Drug repositioning via matrix completion with multi-view side information
In the process of drug discovery and disease treatment, drug repositioning is broadly studied to identify biological targets for existing drugs. Many methods have been proposed for drug-target interaction prediction by taking into account different kinds of data sources. However, most of the existing methods only use one side information for drugs or targets to predict new targets for drugs. Some recent works have improved the prediction accuracy by jointly considering multiple representations of drugs and targets. In this work, the authors propose a drug-target prediction approach by matrix completion with multi-view side...
Source: IET Systems Biology - October 23, 2019 Category: Biology Source Type: research
Diagnosis of attention deficit hyperactivity disorder using non-linear analysis of the EEG signal
In this study, a new approach is proposed based on the combination of some non-linear features to distinguish ADHD from normal children. Lyapunov exponent, fractal dimension, correlation dimension and sample, fuzzy and approximate entropies are the non-linear extracted features. For computing, the chaotic time series of obtained EEG in the brain frontal lobe (FP1, FP2, F3, F4, and Fz) need to be analysed. Experiments on a set of EEG signal obtained from 50 ADHD and 26 normal cases yielded a sensitivity, specificity, and accuracy of 98, 92.31, and 96.05%, respectively. The obtained accuracy provides a significant improvemen...
Source: IET Systems Biology - October 23, 2019 Category: Biology Source Type: research
Oscillation induced by Hopf bifurcation in the p53–Mdm2 feedback module
This study develops an integrated model of the p53-Mdm2 interaction composed of five basic components and time delay in the DNA damage response based on the existing research work. Some critical factors, including time delay, system parameters, and their interactions in the p53-Mdm2 system are investigated to examine their effects on the oscillatory behaviour induced by Hopf bifurcation. It is shown that the positive feedback formed between p53 and the activity of Mdm2 in the cytoplasm can cause a slight decrease in the amplitude of the p53 oscillation. The length of the time delay plays an important role in determining th...
Source: IET Systems Biology - October 23, 2019 Category: Biology Source Type: research
Classification of drug molecules for oxidative stress signalling pathway
In humans, oxidative stress is involved in the development of diabetes, cancer, hypertension, Alzheimers' disease, and heart failure. One of the mechanisms in the cellular defence against oxidative stress is the activation of the Nrf2-antioxidant response element (ARE) signalling pathway. Computation of activity, efficacy, and potency score of ARE signalling pathway and to propose a multi-level prediction scheme for the same is the main aim of the study as it contributes in a big amount to the improvement of oxidative stress in humans. Applying the process of knowledge discovery from data, required knowledge is gathered an...
Source: IET Systems Biology - October 23, 2019 Category: Biology Source Type: research
Biclustering-based association rule mining approach for predicting cancer-associated protein interactions
This study shows the prediction power of association rule mining algorithm over the traditional classifier model without choosing a negative data set. The time complexity of the biclustering-based association rule mining is also analysed and compared to traditional association rule mining. The authors are able to discover 38 new PPIs which are not present in the cancer database. The biological relevance of these newly predicted interactions is analysed by published literature. Recognition of such interactions may accelerate a way of developing new drugs to prevent different cancer-related diseases. (Source: IET Systems Biology)
Source: IET Systems Biology - October 23, 2019 Category: Biology Source Type: research
Down-regulation and clinical significance of miR-7-2-3p in papillary thyroid carcinoma with multiple detecting methods
Altered miRNA expression participates in the biological progress of thyroid carcinoma and functions as a diagnostic marker or therapeutic agent. However, the role of miR-7-2-3p is currently unclear. The authors' study was the first investigation of miR-7-2-3p expression level and diagnostic ability in several public databases. Potential target genes were obtained from DIANA Tools, and function enrichment analysis was then performed. Furthermore, the authors examined expression levels of potential targets in the Human Protein Atlas (HPA) and the Cancer Genome Atlas (TCGA). Finally, the potential transcription factors (TFs) ...
Source: IET Systems Biology - October 23, 2019 Category: Biology Source Type: research
