RNA-seq analysis of mangosteen (Garcinia mangostana L.) fruit ripening
Publication date: Available online 13 May 2017 Source:Genomics Data Author(s): Azhani Abdul Rahman, Hoe-Han Goh, Kok-Keong Loke, Normah Mohd Noor, Wan Mohd Aizat Mangosteen (Garcinia mangostana L.) is known for its delectable taste and contains high amount of xanthones which have been reported to possess anti-cancer, anti-inflammatory and other bioactive properties. However, stage-specific regulation of mangosteen fruit ripening has never been studied in detail. We have performed a comparative transcriptomic analysis of three ripening stages (Stage 0, 2 and 6) of mangosteen. We have obtained a raw data from six libr...
Source: Genomics Data - May 13, 2017 Category: Genetics & Stem Cells Source Type: research
Small RNA sequencing for secondary metabolite analysis in Persicaria minor
Publication date: Available online 13 May 2017 Source:Genomics Data Author(s): Abdul Fatah A. Samad, Nazaruddin Nazaruddin, Muhammad Sajad, Jaeyres Jani, Abdul Munir Abdul Murad, Zamri Zainal, Ismanizan Ismail Persicaria minor (kesum) is an important medicinal plant and commonly found in southeast countries; Malaysia, Thailand, Indonesia, and Vietnam. This plant is enriched with a variety of secondary metabolites (SMs), and among these SMs, terpenoids are in high abundance. Terpenoids are comprised of many valuable biomolecules which have well-established role in agriculture and pharmaceutical industry. In P. mino...
Source: Genomics Data - May 13, 2017 Category: Genetics & Stem Cells Source Type: research
Mannose-Binding Lectin (MBL) gene polymorphisms in susceptibility to pulmonary tuberculosis among the Lur population of Lorestan Province of Iran
Conclusions Our findings demonstrated that HH genotype and H allele may increase the susceptibility to pulmonary TB in the Lur population of Iran, although L allele may decrease the susceptibility to pulmonary TB in this population. We suggest that it is necessary to further more studies with larger sample size and other ethnic population. (Source: Genomics Data)
Source: Genomics Data - May 12, 2017 Category: Genetics & Stem Cells Source Type: research
The draft genome of Corchorus olitorius cv. JRO-524 (Navin)
Publication date: Available online 7 May 2017 Source:Genomics Data Author(s): Debabrata Sarkar, Ajay Kumar Mahato, Pratik Satya, Avijit Kundu, Sangeeta Singh, Pawan Kumar Jayaswal, Akshay Singh, Kaushlendra Bahadur, Sasmita Pattnaik, Nisha Singh, Avrajit Chakraborty, Nur Alam Mandal, Debajeet Das, Tista Basu, Amitha S.V.C.R. Mithra, Dipnarayan Saha, Subhojit Datta, Chandan Sourav Kar, Jiban Mitra, Karabi Datta, Pran Gobinda Karmakar, Tilak Raj Sharma, Trilochan Mohapatra, Nagendra Kumar Singh Here, we present the draft genome (377.3Mbp) of Corchorus olitorious cv. JRO-524 (Navin), which is a leadi...
Source: Genomics Data - May 9, 2017 Category: Genetics & Stem Cells Source Type: research
SMRT sequencing data for Garcinia mangostana L. variety Mesta
Publication date: Available online 5 May 2017 Source:Genomics Data Author(s): Mohd Razik Midin, Kok-Keong Loke, Maria Madon, Mohd Shukor Nordin, Hoe-Han Goh, Normah Mohd Noor The “Queen of Fruits” mangosteen (Garcinia mangostana L.) produces commercially important fruits with desirable taste of flesh and pericarp rich in xanthones with medicinal properties. To date, only limited knowledge is available on the cytogenetics and genome sequences of a common variety of mangosteen (Abu Bakar et al., 2016 [1]). Here, we report the first single-molecule real-time (SMRT) sequencing data from whole genome sequencing of m...
Source: Genomics Data - May 5, 2017 Category: Genetics & Stem Cells Source Type: research
Dynamic regulation of small RNAome during the early stage of cardiac differentiation from pluripotent embryonic stem cells
This study reports the genome-wide small RNAome profile, and provides a uniquely comprehensive view of the small RNA regulatory network that governs embryonic stem cell differentiation and cardiac development. (Source: Genomics Data)
Source: Genomics Data - May 4, 2017 Category: Genetics & Stem Cells Source Type: research
MBL gene polymorphisms in susceptibility to pulmonary tuberculosis among the Lur population of Lorestan Province of Iran
Conclusions Our findings demonstrated that HH genotype and H allele may increase the susceptibility to pulmonary TB in the Lur population of Iran, although L allele may decrease the susceptibility to pulmonary TB in this population. We suggest that it is necessary to further more studies with larger sample size and other ethnic population. (Source: Genomics Data)
Source: Genomics Data - May 4, 2017 Category: Genetics & Stem Cells Source Type: research
Transcriptome analysis of Carica papaya embryogenic callus upon De-etiolated 1 (DET1) gene suppression
This report contains the experimental data on high-throughput 3′ mRNA sequencing of transformed papaya callus upon DET1 gene suppression. (Source: Genomics Data)
Source: Genomics Data - May 3, 2017 Category: Genetics & Stem Cells Source Type: research
Transcriptomic data of Arabidopsis thaliana hypocotyl upon suppression of expansin genes
In this study, we performed transcriptomic analysis on the hypocotyls of previously reported transgenic Arabidopsis line [1] to investigate the effects of expansin gene suppression on the global gene expression pattern, particularly on the cell wall related genes. (Source: Genomics Data)
Source: Genomics Data - May 3, 2017 Category: Genetics & Stem Cells Source Type: research
Iso-Seq analysis of Nepenthes ampullaria, Nepenthes rafflesiana and Nepenthes ×hookeriana for hybridisation study in pitcher plants
In this study, we performed the first single-molecule real-time isoform sequencing (Iso-Seq) analysis of full-length cDNA from Nepenthes ampullaria which can feed on leaf litter, compared to carnivorous Nepenthes rafflesiana, and their carnivorous hybrid Nepenthes × hookeriana. This allows the comparison of pitcher transcriptomes from the parents and the hybrid to understand how hybridisation could shape the evolution of dietary habit in Nepenthes. Raw reads have been deposited to SRA database with the accession numbers SRX2692198 (N. ampullaria), SRX2692197 (N. rafflesiana), and SRX2692196 (N. × hookeriana). (Source: Genomics Data)
Source: Genomics Data - May 3, 2017 Category: Genetics & Stem Cells Source Type: research
DNA shotgun sequencing analysis of Garcinia mangostana L. variety Mesta
Publication date: Available online 1 May 2017 Source:Genomics Data Author(s): Syuhaidah Abu Bakar, Suresh Kumar, Kok-Keong Loke, Hoe-Han Goh, Normah Mohd Noor Mangosteen (Garcinia mangostana Linn.) is an ultra-tropical tree characterized by its unique dark purple fruits with white flesh. The xanthone-rich purple pericarp tissue contains valuable compounds with medicinal properties. Following previously reported genome sequencing of a common variety of mangosteen [1], we performed another whole genome sequencing of a commercially popular variety of this fruit species (var. Mesta) for comparative analysis of its genom...
Source: Genomics Data - May 2, 2017 Category: Genetics & Stem Cells Source Type: research
Complete genome sequence of a natural compounds producer, Streptomyces violaceus S21
Publication date: Available online 28 April 2017 Source:Genomics Data Author(s): Jiafang Fu, Chuanqing Zhong, Zhilong Zhao, Gongli Zong, Guangxiang Cao The complete genome sequence of Streptomyces violaceus strain S21, a valuable natural compounds producer isolated from the forest soil, is firstly presented here. The genome comprised 7.91Mbp, with a G+C content of 72.65%. A range of genes involved in pathways of secondary product biosynthesis were predicted. The genome sequence is available at DDBJ/EMBL/Genbank under the accession number CP020570. This genome is annotated with 6856 predicted genes identifying the na...
Source: Genomics Data - April 29, 2017 Category: Genetics & Stem Cells Source Type: research
Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India
Publication date: Available online 27 April 2017 Source:Genomics Data Author(s): Biswadeep Chaudhuri, Trinath Chowdhury, Brajadulal Chattopadhyay Various aspects of hot springs at Bakreshwar (Lat. 23°52′48″N; Long. 87°22′40″E) in West Bengal, India have been investigated since the middle of 20th century, but comprehending the complete diversity and the complexity of the microbial population therein has been in the continuing process. Some of these microorganisms are found to have immense industrial importance. Microbes generally exist in milieus of varying complexities and diversities. Attempting the usually...
Source: Genomics Data - April 28, 2017 Category: Genetics & Stem Cells Source Type: research
Searching for active mobile genetic elements in dsRNA fraction of Pinus sylvestris having witches broom abnormalities
Publication date: June 2017 Source:Genomics Data, Volume 12 Author(s): A.A. Pochtovyy, O.Yu. Baranov, I.E. Rubel', O.A. Razumova, V.E. Padutov, A.V. Khromov, A.V. Makhotenko, A.P. Tkachuk, V.V. Makarov, V.A. Gushchin The most common type of coniferous mobile genetic elements are retrotransposons. Despite of their early positive impact on evolution of modern coniferous species they can have a significant negative impact for Forestry and breeding. Breaking genomic structural integrity mobile elements can cause phenotypic defects of plants. In this regard, the study of the diversity of coniferous mobile genetic el...
Source: Genomics Data - April 5, 2017 Category: Genetics & Stem Cells Source Type: research
A metagenomic approach to decipher the indigenous microbial communities of arsenic contaminated groundwater of Assam
Publication date: Available online 30 March 2017 Source:Genomics Data Author(s): Saurav Das, Sudipta Sankar Bora, R.N.S. Yadav, Madhumita Barooah Metagenomic approach was used to understand the structural and functional diversity present in arsenic contaminated groundwater of the Ganges Brahmaputra Delta aquifer system. A metagene dataset (coded as TTGW1) of 89,171 sequences (totaling 125,449,864 base pairs) with an average length of 1406bps was annotated. About 74,478 sequences containing 101,948 predicted protein coding regions passed the quality control. Taxonomical classification revealed abundance of bacteria th...
Source: Genomics Data - March 31, 2017 Category: Genetics & Stem Cells Source Type: research
