Transcriptional profile of immediate response to ionizing radiation exposure
This report includes raw gene expression data files from the resulting microarray experiments from all three radiation levels ranging from a lower, typical exposure than an astronaut might see (0.3Gy) to high, potentially lethal, levels of radiation (3.0Gy). The data described here is available in NCBI's Gene Expression Omnibus (GEO), accession GSE64375. (Source: Genomics Data)
Source: Genomics Data - December 12, 2015 Category: Genetics & Stem Cells Source Type: research
Plasmodium falciparum epigenome: A distinct dynamic epigenetic regulation of gene expression
Publication date: March 2016 Source:Genomics Data, Volume 7 Author(s): Mukul Rawat, Madhvi A. Bhosale, Krishanpal Karmodiya Histone modification profiles are predictive of gene expression and most of the knowledge gained is acquired through studies done in higher eukaryotes. However, genome-wide studies involving Plasmodium falciparum, the causative agent of malaria, have been rather few, at lower resolution (mostly using ChIP-on-chip), and covering limited number of histone modifications. In our recent study [1], we have performed extensive genome-wide analyses of multiple histone modifications including the act...
Source: Genomics Data - December 12, 2015 Category: Genetics & Stem Cells Source Type: research
Bacterial diversity assessment of pristine mangrove microbial community from Dhulibhashani, Sundarbans using 16S rRNA gene tag sequencing
Publication date: March 2016 Source:Genomics Data, Volume 7 Author(s): Pijush Basak, Arnab Pramanik, Sohan Sengupta, Sudip Nag, Anish Bhattacharyya, Debojyoti Roy, Rudradip Pattanayak, Abhrajyoti Ghosh, Dhrubajyoti Chattopadhyay, Maitree Bhattacharyya The global knowledge of microbial diversity and function in Sundarbans ecosystem is still scarce, despite global advancement in understanding the microbial diversity. In the present study, we have analyzed the diversity and distribution of bacteria in the tropical mangrove sediments of Sundarbans using 16S rRNA gene amplicon sequencing. Metagenome is c...
Source: Genomics Data - December 11, 2015 Category: Genetics & Stem Cells Source Type: research
RNA sequencing analysis to demonstrate Erk dependent and independent functions of Mek
Publication date: March 2016 Source:Genomics Data, Volume 7 Author(s): Chang Liu, Haixia Chen, Lin Liu, Lingyi Chen Mek inhibition and Erk knockout (KO) have quite distinct effects on pluripotency maintenance in mouse embryonic stem cells (ESCs). To test whether there is an Erk-independent function of Mek, RNA-sequencing (RNA-seq) is carried out on six samples, WT KH2 ESCs treated with or without PD0325901 (PD) for 48h (KH2_PD and KH2, respectively), iErk1; Erk KO ESCs cultured in the presence of Dox (P0), 48 and 96h after Dox withdrawal (P1 and P2, respectively), and iErk1; Erk KO ESCs cultured without Dox for...
Source: Genomics Data - December 5, 2015 Category: Genetics & Stem Cells Source Type: research
Genome sequence of carboxylesterase, carboxylase and xylose isomerase producing alkaliphilic haloarchaeon Haloterrigena turkmenica WANU15
We report draft genome sequence of Haloterrigena turkmenica strain WANU15, isolated from Soda Lake. The draft genome size is 2,950,899bp with a G+C content of 64% and contains 49 RNA sequence. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no. LKCV00000000. (Source: Genomics Data)
Source: Genomics Data - December 5, 2015 Category: Genetics & Stem Cells Source Type: research
