Analysis of complex DNA mixtures using massively parallel sequencing of SNPs with low minor allele frequencies

Publication date: Available online 17 January 2020Source: Forensic Science International: GeneticsAuthor(s): Martha S. Petrovick, Tara Boettcher, Philip Fremont-Smith, Chelsea Peragallo, Darrell O. Ricke, James Watkins, Eric SchwoebelAbstractDNA mixtures from 3 or more contributors have proven difficult to analyze using the current state-of-the-art method of short-tandem repeat (STR) amplification followed by capillary electrophoresis (CE). Here we analyze samples from both laboratory-defined mixtures and complex multi-contributor touch samples using a single nucleotide polymorphism (SNP) panel comprised of 2311 low-minor-allele-frequency loci, combined with massively parallel sequencing (MPS). This approach demonstrates that as many as 10 people can be identified in touch samples using a threshold of -Log P(RMNE) of 6, and a detection rate of 18-94% across 10 different materials using a threshold of -Log P(RMNE) of 2. Thirty-two false positives were observed in 100 touch samples.
Source: Forensic Science International: Genetics - Category: Forensic Medicine Source Type: research