Aligning short sequencing reads with Bowtie.

Aligning short sequencing reads with Bowtie. Curr Protoc Bioinformatics. 2010 Dec;Chapter 11:Unit 11.7 Authors: Langmead B Abstract This unit shows how to use the Bowtie package to align short sequencing reads, such as those output by second-generation sequencing instruments. It also includes protocols for building a genome index and calling consensus sequences from Bowtie alignments using SAMtools. PMID: 21154709 [PubMed - indexed for MEDLINE]

http://www.ncbi.nlm.nih.gov/pubmed/21154709?dopt=Abstract

Source: Current Protocols in Bioinformatics - November 12, 2014 Category: Bioinformatics Tags: Curr Protoc Bioinformatics Source Type: research

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