CONDOP: an R package for CONdition-Dependent Operon Predictions

Summary: The use of high-throughput RNA sequencing to predict dynamic operon structures in prokaryotic genomes has recently gained popularity in bioinformatics. We provide the R implementation of a novel method that uses transcriptomic features extracted from RNA-seq transcriptome profiles to develop ensemble classifiers for condition-dependent operon predictions. The CONDOP package provides a deeper insight into RNA-seq data analysis and allows scientists to highlight the operon organization in the context of transcriptional regulation with a few lines of code.
Availability and Implementation: CONDOP is implemented in R and is freely available at CRAN.
Contact: [e-mail]
Supplementary information: Supplementary data are available at Bioinformatics online.

Source: Bioinformatics - October 2, 2016 Category: Bioinformatics Authors: Fortino, V., Tagliaferri, R., Greco, D. Tags: GENE EXPRESSION Source Type: research