XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data

We present XLinkDB 2.0 which integrates tools for network analysis, Protein Databank queries, modeling of predicted protein structures and modeling of docked protein structures. The novel, integrated approach of XLinkDB 2.0 enables the holistic analysis of XL-MS protein interaction data without limitation to the cross-linker or analytical system used for the analysis.
Availability and Implementation: XLinkDB 2.0 can be found here, including documentation and help: http://xlinkdb.gs.washington.edu/.
Contact: [e-mail]
Supplementary information: Supplementary data are available at Bioinformatics online.

Source: Bioinformatics - August 31, 2016 Category: Bioinformatics Authors: Schweppe, D. K., Zheng, C., Chavez, J. D., Navare, A. T., Wu, X., Eng, J. K., Bruce, J. E. Tags: SYSTEMS BIOLOGY Source Type: research