Comparative transcriptome analysis of ginger variety Suprabha from two different agro-climatic zones of Odisha

Publication date: September 2016 Source:Genomics Data, Volume 9 Author(s): Mahendra Gaur, Aradhana Das, Rajesh Kumar Sahoo, Sujata Mohanty, Raj Kumar Joshi, Enketeswara Subudhi Ginger (Zingiber officinale Rosc.), a well-known member of family Zingiberaceae, is bestowed with number of medicinal properties which is because of the secondary metabolites, essential oil and oleoresin, it contains in its rhizome. The drug yielding potential is known to depend on agro-climatic conditions prevailing at the place cultivation. Present study deals with comparative transcriptome analysis of two sample of elite ginger variety Suprabha collected from two different agro-climatic zones of Odisha. Transcriptome assembly for both the samples was done using next generation sequencing methodology. The raw data of size 10.8 and 11.8GB obtained from analysis of two rhizomes S1Z4 and S2Z5 collected from Bhubaneswar and Koraput and are available in NCBI accession number SAMN03761169 and SAMN03761176 respectively. We identified 60,452 and 54,748 transcripts using trinity tool respectively from ginger rhizome of S1Z4 and S2Z5. The transcript length varied from 300bp to 15,213bp and 8988bp and N50 value of 1415bp and 1334bp respectively for S1Z4 and S2Z5. To the best of our knowledge, this is the first comparative transcriptome analysis of elite ginger cultivars Suprabha from two different agro-climatic conditions of Odisha, India which will help to understand the effect of agro-climatic...

Source: Genomics Data - July 18, 2016 Category: Genetics & Stem Cells Source Type: research